PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YB
Protein Properties Length: 139aa    MW: 15737.3 Da    PI: 6.2698
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723770genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.62.6e-51297297
      NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
               +++dr+lPianv+r+mk++lP+nakisk+ak+tvqec++efisfvt+easdkc+re+rkt+ngdd++wal+tlG+++y++++  +l+kyre+e+e+
  676723770  2 TDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASDKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERER 97
               689******************************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-482121IPR009072Histone-fold
SuperFamilySSF471131.51E-384121IPR009072Histone-fold
PfamPF008081.1E-25771IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-163553No hitNo description
PROSITE patternPS0068503854IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-165472No hitNo description
PRINTSPR006153.8E-167391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SDKCHRENRK  60
TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERAEN NKSSNDSGNE REPNSRSDPQ  120
NQPTEFIRVL EKGSSSSAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-39192192Transcription factor HapC (Eurofung)
4g92_B1e-39192192Transcription factor HapC (Eurofung)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0293631e-145BT029363.1 Arabidopsis thaliana At1g09030 mRNA, complete cds.
GenBankCP0026841e-145CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7G191e-145AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417619.13e-95hypothetical protein EUTSA_v10009804mg
SwissprotO040273e-95NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLV4L0Z93e-95V4L0Z9_EUTSA; Uncharacterized protein
STRINGscaffold_100932.11e-93(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-89nuclear factor Y, subunit B4